convert_fasta_2_nexus

yoda_powers.bio.convert_fasta_2_nexus(path_directory, path_directory_out)

Return the number of fasta file’s convert find in directory (“fasta”, “fa”, “fas”) where are converted

Warning

Sequence on fasta must align and have the same length

Notes

function need modules:

• pathlib

• BioPython

Parameters

• path_directory (str) – a path to fasta file directory

• path_directory_out (str) – a directory path to write nexus file

Returns

the number of file converted

Return type

int

Raises

• ValueError – If path_directory does not exist.

• ValueError – If path_directory is not a valid directory.

• ValueError – If fasta is not align.

Examples

>>> nb_file = convert_fasta_2_nexus('path/to/directory/',' path/to/directory/')
>>> print(nb_file)
    "4172"