filter_mummer.py

More information:

Script version: 0.0.1

usage: filter_mummer.py -l path/to/file/csv [-v] [-h] [-d] [-p] [-c int]
                        [-f int]

Documentation avail at: https://yoda-powers.readthedocs.io/en/latest/

Input mandatory infos for running

-l <path/to/file/csv>, --lib <path/to/file/csv>

path to file with size library, use to normalize data

Input infos not mandatory

-v, --version

Use if you want to know which version of filter_mummer.py you are using

-h, --help

show this help message and exit

-d, --debug

enter verbose/debug mode

-p, --plot

plot connections distribution

-c <int>, --chromosome <int>

Minimum of scaffold size (default = 1000000)

-f <int>, --fragments <int>

Minimum of connection size (default = 5000)