Yoda powers Library
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scripts
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API documentation
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Required Module install
Sub module information
Example of usage
Toolbox
yoda_powers.toolbox Package
Functions
Classes
Display
yoda_powers.display Package
Functions
Bio
yoda_powers.bio Package
Functions
Classes
Yoda powers Library
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Index
Symbols
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A
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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Y
Symbols
--chromosome <int>
filter_mummer.py command line option
--debug
filter_mummer.py command line option
--fragments <int>
filter_mummer.py command line option
--help
cli.py command line option
filter_mummer.py command line option
--identity <identity>
cli.py command line option
--lib <path/to/file/csv>
filter_mummer.py command line option
--plot
filter_mummer.py command line option
--sum
cli.py command line option
--version
filter_mummer.py command line option
-c <int>
filter_mummer.py command line option
-d
filter_mummer.py command line option
-f <int>
filter_mummer.py command line option
-h
cli.py command line option
filter_mummer.py command line option
-i <identity>
cli.py command line option
-l <path/to/file/csv>
filter_mummer.py command line option
-p
filter_mummer.py command line option
-v
filter_mummer.py command line option
A
absolute() (yoda_powers.toolbox.Directory method)
anchor (yoda_powers.toolbox.Directory attribute)
as_posix() (yoda_powers.toolbox.Directory method)
as_uri() (yoda_powers.toolbox.Directory method)
AutoVivification (class in yoda_powers.toolbox)
C
chmod() (yoda_powers.toolbox.Directory method)
clear() (yoda_powers.toolbox.AutoVivification method)
cli.py command line option
--help
--identity <identity>
--sum
-h
-i <identity>
n
compare_list() (in module yoda_powers.toolbox)
concat_fasta_files() (in module yoda_powers.bio)
convert_fasta_2_nexus() (in module yoda_powers.bio)
copy() (yoda_powers.toolbox.AutoVivification method)
cwd() (yoda_powers.toolbox.Directory class method)
D
dict_2_fasta() (in module yoda_powers.bio)
dict_2_txt() (in module yoda_powers.display)
dict_dict_2_txt() (in module yoda_powers.display)
dict_list_2_txt() (in module yoda_powers.display)
Directory (class in yoda_powers.toolbox)
drive (yoda_powers.toolbox.Directory attribute)
E
existant_file() (in module yoda_powers.toolbox)
exists() (yoda_powers.toolbox.Directory method)
expanduser() (yoda_powers.toolbox.Directory method)
extract_seq_from_fasta() (in module yoda_powers.bio)
F
fasta_2_dict() (in module yoda_powers.bio)
filter_mummer.py command line option
--chromosome <int>
--debug
--fragments <int>
--help
--lib <path/to/file/csv>
--plot
--version
-c <int>
-d
-f <int>
-h
-l <path/to/file/csv>
-p
-v
fromkeys() (yoda_powers.toolbox.AutoVivification method)
G
get() (yoda_powers.toolbox.AutoVivification method)
glob() (yoda_powers.toolbox.Directory method)
green() (yoda_powers.toolbox.PrintCol class method)
group() (yoda_powers.toolbox.Directory method)
H
home() (yoda_powers.toolbox.Directory class method)
I
is_absolute() (yoda_powers.toolbox.Directory method)
is_block_device() (yoda_powers.toolbox.Directory method)
is_char_device() (yoda_powers.toolbox.Directory method)
is_dir() (yoda_powers.toolbox.Directory method)
is_fifo() (yoda_powers.toolbox.Directory method)
is_file() (yoda_powers.toolbox.Directory method)
is_mount() (yoda_powers.toolbox.Directory method)
is_reserved() (yoda_powers.toolbox.Directory method)
is_socket() (yoda_powers.toolbox.Directory method)
is_symlink() (yoda_powers.toolbox.Directory method)
items() (yoda_powers.toolbox.AutoVivification method)
iterdir() (yoda_powers.toolbox.Directory method)
J
joinpath() (yoda_powers.toolbox.Directory method)
K
keys() (yoda_powers.toolbox.AutoVivification method)
L
lchmod() (yoda_powers.toolbox.Directory method)
len_seq_2_dict() (in module yoda_powers.bio)
lightPurple() (yoda_powers.toolbox.PrintCol class method)
list_dir (yoda_powers.toolbox.Directory attribute)
list_files (yoda_powers.toolbox.Directory attribute)
list_files_ext() (yoda_powers.toolbox.Directory method)
list_path (yoda_powers.toolbox.Directory attribute)
load_in_dict() (in module yoda_powers.toolbox)
load_in_dict_dict() (in module yoda_powers.toolbox)
load_in_dict_selected() (in module yoda_powers.toolbox)
load_in_list() (in module yoda_powers.toolbox)
load_in_list_col() (in module yoda_powers.toolbox)
lstat() (yoda_powers.toolbox.Directory method)
M
match() (yoda_powers.toolbox.Directory method)
max_key_dict() (in module yoda_powers.toolbox)
mkdir() (yoda_powers.toolbox.Directory method)
module
scripts
,
[1]
yoda_powers
yoda_powers.bio
yoda_powers.display
yoda_powers.toolbox
N
n
cli.py command line option
name (yoda_powers.toolbox.Directory attribute)
nb_seq_files_2_dict() (in module yoda_powers.bio)
O
open() (yoda_powers.toolbox.Directory method)
owner() (yoda_powers.toolbox.Directory method)
P
parent (yoda_powers.toolbox.Directory attribute)
parents (yoda_powers.toolbox.Directory attribute)
ParseGFF (class in yoda_powers.bio)
parseGFF3() (yoda_powers.bio.ParseGFF method)
parseGFFAttributes() (yoda_powers.bio.ParseGFF static method)
parts (yoda_powers.toolbox.Directory attribute)
pop() (yoda_powers.toolbox.AutoVivification method)
popitem() (yoda_powers.toolbox.AutoVivification method)
PrintCol (class in yoda_powers.toolbox)
purple() (yoda_powers.toolbox.PrintCol class method)
R
read_bytes() (yoda_powers.toolbox.Directory method)
read_text() (yoda_powers.toolbox.Directory method)
readable_dir() (in module yoda_powers.toolbox)
red() (yoda_powers.toolbox.PrintCol class method)
relative_to() (yoda_powers.toolbox.Directory method)
rename() (yoda_powers.toolbox.Directory method)
replace() (yoda_powers.toolbox.Directory method)
replace_all() (in module yoda_powers.toolbox)
resolve() (yoda_powers.toolbox.Directory method)
rglob() (yoda_powers.toolbox.Directory method)
rmdir() (yoda_powers.toolbox.Directory method)
root (yoda_powers.toolbox.Directory attribute)
S
samefile() (yoda_powers.toolbox.Directory method)
scripts
module
,
[1]
setdefault() (yoda_powers.toolbox.AutoVivification method)
sort_human() (in module yoda_powers.toolbox)
stat() (yoda_powers.toolbox.Directory method)
stem (yoda_powers.toolbox.Directory attribute)
suffix (yoda_powers.toolbox.Directory attribute)
suffixes (yoda_powers.toolbox.Directory attribute)
symlink_to() (yoda_powers.toolbox.Directory method)
T
touch() (yoda_powers.toolbox.Directory method)
U
unlink() (yoda_powers.toolbox.Directory method)
update() (yoda_powers.toolbox.AutoVivification method)
V
values() (yoda_powers.toolbox.AutoVivification method)
W
welcome_args() (in module yoda_powers.toolbox)
with_name() (yoda_powers.toolbox.Directory method)
with_suffix() (yoda_powers.toolbox.Directory method)
write_bytes() (yoda_powers.toolbox.Directory method)
write_text() (yoda_powers.toolbox.Directory method)
Y
yellow() (yoda_powers.toolbox.PrintCol class method)
yoda_powers
module
yoda_powers.bio
module
yoda_powers.display
module
yoda_powers.toolbox
module
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